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About PopSc

PopSc is a toolkit for computing 45 basic statistics in molecular population genetics, mainly including (i) genetic diversity of DNA sequences, (ii) statistical tests for neutral evolution, and (iii) measures of genetic differentiation among populations. PopSc was independently implemented in Python library, R package, and web-based calculator, which obviously facilitates the direct integration into other sophisticated bioinformatic packages, or promotes the convenient calculation of statistics.

Web-based calculator of PopSc

Online calculator

PopSc in Python

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Installation:
    pip install popsc

PopSc in R

download
Installation:
    install.packages("/path/to/popsc_1.0.0.tar.gz")

Paper of PopSc

S-Y Chen, F Deng, Y Huang, C Li, L Liu, X Jia, S-J Lai. PopSc: Computing Toolkit for Basic Statistics of Molecular Population Genetics Simultaneously Implemented in Web-Based Calculator, Python and R. PLoS ONE, 2016, 11(10): e0165434.

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0165434

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